Index

_

__init__() (circuitree.circuitree.CircuiTree method) (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimerNetworkTree method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method) (circuitree.models.SimpleNetworkTree method) (circuitree.utils.AtomicCounter method) (circuitree.utils.ManagedEvent method)

A

AtomicCounter (class in circuitree.utils)

B

backpropagate_reward() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) backpropagate_visit() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

bfs_iterator() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

C

CircuitGrammar (class in circuitree.grammar) CircuiTree (class in circuitree.circuitree) clear() (circuitree.utils.ManagedEvent method) complexity_layout() (in module circuitree.viz)

component_codes (circuitree.models.SimpleNetworkGrammar property) copy_graph() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

D

default_attrs (circuitree.circuitree.CircuiTree property) (circuitree.models.DimerNetworkTree property) (circuitree.models.SimpleNetworkTree property) dimer_options (circuitree.models.DimersGrammar property)

DimerNetworkTree (class in circuitree.models) DimersGrammar (class in circuitree.models) do_action() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method)

E

edge_options (circuitree.models.DimersGrammar property) enumerate_terminal_states() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

expand_edge() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

F

from_file() (circuitree.circuitree.CircuiTree class method) (circuitree.models.DimerNetworkTree class method) (circuitree.models.SimpleNetworkTree class method)

G

generate_gml() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) get_actions() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method) get_attributes() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) get_component_recolorings() (circuitree.models.SimpleNetworkGrammar method) get_genotype_parts() (circuitree.models.DimersGrammar static method) get_random_terminal_descendant() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) get_recolorings() (circuitree.models.SimpleNetworkGrammar method) get_reward() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

get_ucb_score() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) get_undo_actions() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method) get_unique_state() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method) grow_tree() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) grow_tree_from_leaves() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

H

has_pattern() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar static method) (circuitree.models.SimpleNetworkGrammar method)

I

is_set() (circuitree.utils.ManagedEvent method) is_success() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

is_terminal() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar static method) (circuitree.models.SimpleNetworkGrammar static method) isSet() (circuitree.utils.ManagedEvent method)

M

ManagedEvent (class in circuitree.utils)

merge_overlapping_sets() (in module circuitree.utils)

P

parse_genotype() (circuitree.models.DimersGrammar static method) (circuitree.models.SimpleNetworkGrammar static method)

plot_complexity() (in module circuitree.viz) plot_network() (in module circuitree.viz)

R

rgb2hex() (in module circuitree.viz)

S

sample_successful_circuits_by_enumeration() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) sample_successful_circuits_by_rejection() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) sample_terminal_states() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) search_bfs() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

search_mcts() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) search_mcts_parallel() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) select_and_expand() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) set() (circuitree.utils.ManagedEvent method) SimpleNetworkGrammar (class in circuitree.models) SimpleNetworkTree (class in circuitree.models)

T

terminal_states (circuitree.circuitree.CircuiTree property) (circuitree.models.DimerNetworkTree property) (circuitree.models.SimpleNetworkTree property) test_pattern_significance() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) to_complexity_graph() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) to_dict() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method)

to_file() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) to_string() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method) traverse() (circuitree.circuitree.CircuiTree method) (circuitree.models.DimerNetworkTree method) (circuitree.models.SimpleNetworkTree method)

U

ucb_score() (in module circuitree.circuitree) undo_action() (circuitree.grammar.CircuitGrammar method) (circuitree.models.DimersGrammar method) (circuitree.models.SimpleNetworkGrammar method)

W

wait() (circuitree.utils.ManagedEvent method)