API Reference

CircuiTree

CircuiTree	A base class for implementing the Monte Carlo Tree Search (MCTS) algorithm for circuit topologies.
ucb_score	Compute the UCB score for a node in the search graph.

Built-in Grammars

SimpleNetworkGrammar	A Grammar class for pairwise interaction networks.
SimpleNetworkTree	A convenience subclass of CircuiTree that uses SimpleNetworkGrammar by default.
DimersGrammar	(Experimental) A grammar class for the design space of dimerizing TF networks.
DimerNetworkTree	A convenience subclass of CircuiTree that uses DimersGrammar by default.

Low-level CircuitGrammar API

CircuitGrammar

Abstract class for Grammars.

Visualisation

rgb2hex	Converts rgb colors to hex
complexity_layout	Returns the depth and xy coordinates of each node in the search graph when visualized based on complexity.
plot_complexity
plot_network	Plot an N-component network as a circular diagram.

Utility functions and classes

merge_overlapping_sets	Given an iterable of non-empty sets, merges any sets that have non-empty intersection
ManagedEvent	Event object that also provides a context manager.
AtomicCounter	A simple thread-safe counter.